# Publications Sort & Filters close ## Filters Year of Publication expand\_more 2025 (8) 2024 (1) 2023 (6) 2022 (4) 2021 (6) 2020 (5) 2019 (3) 2018 (4) 2017 (1) 2016 (8) 2015 (5) 2014 (3) 2013 (10) 2012 (10) 2011 (2) 2010 (4) 2009 (3) 2008 (6) 2007 (5) 2006 (5) 2005 (1) 2004 (1) 2003 (1) 2001 (2) 1999 (3) 1998 (1) 1997 (1) 1996 (3) 1995 (1) Search Within Results Search Within Results search ## 113 results Show filters filter\_alt Sort by Year of PublicationAlphabetical A-Z sort ## 113 results Download 113 citations download- [BibTeX](/node/710821/export?format=bibtex) - [EndNote X3 XML](/node/710821/export?format=endnote8) - [EndNote 7 XML](/node/710821/export?format=endnote7) - [Endnote tagged](/node/710821/export?format=tagged) - [Marc](/node/710821/export?format=marc) - [PubMedId](/node/710821/export?format=pubmed_id) - [RIS](/node/710821/export?format=ris) ### 2025 Rogel-Hernandez, et al. [The anticonvulsant and mood-stabilizing drug valproic acid attracts C. elegans and activates chemosensory neurons via a cGMP signaling pathway](https://pubmed.ncbi.nlm.nih.gov/41292760/). (2025). Rogel-Hernandez, et al. [The anticonvulsant and mood-stabilizing drug valproic acid attracts C. elegans and activates chemosensory neurons via a cGMP signaling pathway](https://pubmed.ncbi.nlm.nih.gov/41292760/). (2025). - add\_circle\_outline do\_not\_disturb\_on Abstract Valproic acid (VPA) is a drug with both anticonvulsant and antimanic properties. It has been widely prescribed to treat epilepsy, bipolar disorder, and other neuropsychiatric conditions for decades, but prenatal exposure is linked to developmental... Vrabioiu, et al. [The dynamic response of the bacterial flagellar motor to its direct intracellular input signal](https://www.biorxiv.org/content/10.1101/2025.10.28.684865v1). (2025). Vrabioiu, et al. [The dynamic response of the bacterial flagellar motor to its direct intracellular input signal](https://www.biorxiv.org/content/10.1101/2025.10.28.684865v1). (2025). - add\_circle\_outline do\_not\_disturb\_on Abstract The bacterial flagellar motor drives bacterial swimming and chemotaxis by rotating helical flagellar filaments. When *Escherichia coli* navigates chemical gradients, the motor switches from counterclockwise (CCW) during forward swimming to clockwise (CW)... al, M. Y. et. [Smartem: Machine-learning guided electron microscopy](https://pmc.ncbi.nlm.nih.gov/articles/PMC11195061/). (2025). al, M. Y. et. [Smartem: Machine-learning guided electron microscopy](https://pmc.ncbi.nlm.nih.gov/articles/PMC11195061/). (2025). - add\_circle\_outline do\_not\_disturb\_on Abstract Connectomics provides nanometer-resolution, synapse-level maps of neural circuits to understand brain activity and behavior. However, few researchers have access to the high-throughput electron microscopes necessary to generate enough data for whole brain... Hosu, B. [Torque-generating units of the bacterial flagellar motor are rotary motors](https://pubmed.ncbi.nlm.nih.gov/41337489/). (2025). Hosu, B. [Torque-generating units of the bacterial flagellar motor are rotary motors](https://pubmed.ncbi.nlm.nih.gov/41337489/). (2025). - add\_circle\_outline do\_not\_disturb\_on Abstract *Escherichia coli* swims using helical flagellar filaments driven at their base by a rotary motor. Torque-generating "stator" units drive the bacterial flagellar motor by transmitting mechanical power to a cytoplasmic "rotor," the C-ring. Each stator unit... Eschbach, et al. [A multisensory, bidirectional, valence encoder guides behavioral decisions](https://www.biorxiv.org/content/10.1101/2025.09.26.678749v1.full). (2025). Eschbach, et al. [A multisensory, bidirectional, valence encoder guides behavioral decisions](https://www.biorxiv.org/content/10.1101/2025.09.26.678749v1.full). (2025). - add\_circle\_outline do\_not\_disturb\_on Abstract A key function of the brain is to categorize sensory cues as repulsive or attractive and respond accordingly. While we have some understanding of how sensory information is processed in the sensory periphery, the classification of cues according to... Jacobsen, R. & Samuel, A. [Thermoregulation: Tactics for navigating thermal gradients](https://pubmed.ncbi.nlm.nih.gov/41253121/). (2025). Jacobsen, R. & Samuel, A. [Thermoregulation: Tactics for navigating thermal gradients](https://pubmed.ncbi.nlm.nih.gov/41253121/). (2025). - add\_circle\_outline do\_not\_disturb\_on Abstract Small ectotherms, including larval zebrafish, must thermoregulate by navigating up and down thermal gradients: new work quantifying the underlying behavioral algorithm and rich neural representations illuminates the strategy behind larval zebrafish... Zimmerman, D. M. [Permeabilization with fenchone enhances cryopreservation of Drosophila embryos](https://www.biorxiv.org/content/10.1101/2025.11.06.687078v1). (2025). Zimmerman, D. M. [Permeabilization with fenchone enhances cryopreservation of Drosophila embryos](https://www.biorxiv.org/content/10.1101/2025.11.06.687078v1). (2025). - add\_circle\_outline do\_not\_disturb\_on Abstract The difficulty of cryopreservation has long been a limitation of *Drosophila melanogaster* as a genetic model organism. Here we report a statistically significant improvement in the efficiency of *Drosophila* cryopreservation by substituting limonene with the... Wan, et al. [Efficient pheromone navigation via antagonistic detectors](https://www.biorxiv.org/content/10.1101/2024.11.22.624901v1). (2025). Wan, et al. [Efficient pheromone navigation via antagonistic detectors](https://www.biorxiv.org/content/10.1101/2024.11.22.624901v1). (2025). - add\_circle\_outline do\_not\_disturb\_on Abstract Chemotaxis to a potential mate who is moving and emitting a volatile sex pheromone poses a navigation challenge that requires rapid, precise responses to maximize reproductive success. We demonstrate that *Caenorhabditis elegans* males address this... ### 2024 Park, C. F. *et al.* [Automated neuron tracking inside moving and deforming animals using deep learning and targeted augmentation](/publications/automated-neuron-tracking-inside-moving-and-deforming-animals-using-deep). *Nature Methods* **21**, 5 (2024). Park, C. F. *et al.* [Automated neuron tracking inside moving and deforming animals using deep learning and targeted augmentation](/publications/automated-neuron-tracking-inside-moving-and-deforming-animals-using-deep). *Nature Methods* **21**, 5 (2024). - add\_circle\_outline do\_not\_disturb\_on Abstract - [ picture\_as\_pdfPreprint](/sites/g/files/omnuum2971/files/aravisamuel/files/automated_neuron_tracking_inside_moving_and_deforming_animals_using_deep_learning_and_targeted_augmentation.pdf) - [Link](https://www.nature.com/articles/s41592-023-02096-3) Advances in functional brain imaging now allow sustained rapid 3D visualization of large numbers of neurons inside behaving animals. To decode circuit activity, imaged neurons must be individually segmented and tracked. This is particularly challenging... - [ picture\_as\_pdfPreprint](/sites/g/files/omnuum2971/files/aravisamuel/files/automated_neuron_tracking_inside_moving_and_deforming_animals_using_deep_learning_and_targeted_augmentation.pdf) - [Link](https://www.nature.com/articles/s41592-023-02096-3) ### 2023 Susoy, V. & Samuel, A. D. [Evolutionarily conserved behavioral plasticity enables context- dependent mating in C. elegans](/publications/evolutionarily-conserved-behavioral-plasticity-enables-context-dependent). *Current Biology* **33**, 4532–4537.E3 (2023). Susoy, V. & Samuel, A. D. [Evolutionarily conserved behavioral plasticity enables context- dependent mating in C. elegans](/publications/evolutionarily-conserved-behavioral-plasticity-enables-context-dependent). *Current Biology* **33**, 4532–4537.E3 (2023). - add\_circle\_outline do\_not\_disturb\_on Abstract - [ descriptionPublisher's Version](https://www.cell.com/current-biology/fulltext/S0960-9822(23)01216-2) - [ picture\_as\_pdfPreprint](/sites/g/files/omnuum2971/files/aravisamuel/files/evolutionarily_conserved_behavioral_plasticity_enables_context-_dependent_mating_in_c._elegans.pdf) Behavioral plasticity helps humans and animals to achieve their goals by adapting their behaviors to different environments. Although behavioral plasticity is ubiquitous, many innate species-specific behaviors, such as mating, are often assumed to be... - [ descriptionPublisher's Version](https://www.cell.com/current-biology/fulltext/S0960-9822(23)01216-2) - [ picture\_as\_pdfPreprint](/sites/g/files/omnuum2971/files/aravisamuel/files/evolutionarily_conserved_behavioral_plasticity_enables_context-_dependent_mating_in_c._elegans.pdf) Pavarino, E. C. *et al.* [Membrain: An interactive deep learning matlab tool for connectomic segmentation on commodity desktops](/publications/membrain-interactive-deep-learning-matlab-tool-connectomic-segmentation). *Frontiers in Neural Circuits* **17**, (2023). Pavarino, E. C. *et al.* [Membrain: An interactive deep learning matlab tool for connectomic segmentation on commodity desktops](/publications/membrain-interactive-deep-learning-matlab-tool-connectomic-segmentation). *Frontiers in Neural Circuits* **17**, (2023). - add\_circle\_outline do\_not\_disturb\_on Abstract - [ descriptionPublisher's Version](https://doi.org/10.3389/fncir.2023.952921) - [ picture\_as\_pdfPreprint](/sites/g/files/omnuum2971/files/aravisamuel/files/membrain_an_interactive_deep_learning_matlab_tool_for_connectomic_segmentation_on_commodity_desktops.pdf) Connectomics is fundamental in propelling our understanding of the nervous system's organization, unearthing cells and wiring diagrams reconstructed from volume electron microscopy (EM) datasets. Such reconstructions, on the one hand, have benefited from... - [ descriptionPublisher's Version](https://doi.org/10.3389/fncir.2023.952921) - [ picture\_as\_pdfPreprint](/sites/g/files/omnuum2971/files/aravisamuel/files/membrain_an_interactive_deep_learning_matlab_tool_for_connectomic_segmentation_on_commodity_desktops.pdf) Lin, A. *et al.* [Functional imaging and quantification of multineuronal olfactory responses in C. elegans](/publications/functional-imaging-and-quantification-multineuronal-olfactory-responses-c). *Science Advances* **9**, eade1249 (2023). Lin, A. *et al.* [Functional imaging and quantification of multineuronal olfactory responses in C. elegans](/publications/functional-imaging-and-quantification-multineuronal-olfactory-responses-c). *Science Advances* **9**, eade1249 (2023). - add\_circle\_outline do\_not\_disturb\_on Abstract - [ descriptionPublisher's Version](https://doi.org/10.1126/sciadv.ade1249) - [ picture\_as\_pdfPreprint](/sites/g/files/omnuum2971/files/aravisamuel/files/functional_imaging_and_quantification_of_multineuronal_olfactory_responses_in_c._elegans.pdf) Many animals perceive odorant molecules by collecting information from ensembles of olfactory neurons, where each neuron uses receptors that are tuned to recognize certain odorant molecules with different binding affinity. Olfactory systems are able, in... - [ descriptionPublisher's Version](https://doi.org/10.1126/sciadv.ade1249) - [ picture\_as\_pdfPreprint](/sites/g/files/omnuum2971/files/aravisamuel/files/functional_imaging_and_quantification_of_multineuronal_olfactory_responses_in_c._elegans.pdf) - Previous page chevron\_left - [1](?page=0 "Current page") - [2](?page=1 "Go to page 2") - [3](?page=2 "Go to page 3") - [ Last page 10 ](?page=9 "Go to last page") - [ Next page chevron\_right ](?page=1 "Go to next page")